rs47085716 SNP Detail

Summary

• ID
  rs47085716
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:34354534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGCCCCGTC TCCGGCCTTC TGCTGGCCAC GGGCTCGCAG
  GTTTCCCTCC CCAGTCCGCG GACGGAGGTC GCGACTCCCG CCGCCCTCGC ACCTTTCCTT
  G
  CCTCGCAGGC AGCCTCGCCC TTACTAGCAG TCTTCTGTCC GCTCTAGGTG CGTGGGTCGT
  CCAGCCCATT TCTTTTCGCG TTCAACCTTT AAAAAAACA                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146937893	ENSMUSSNP7150655	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47085716					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:34354534 () rs orientation: forward

Symbol	Name	Function Class
Apc	APC, WNT signaling pathway regulator	Intron
Cpgi9813	CpG island 9813	within coordinates
Rr370354	regulatory region 370354	580 bp downstream
Rr535610	regulatory region 535610	487 bp distal
Rr535611	regulatory region 535611	543 bp distal
Rr535612	regulatory region 535612	within coordinates
Rr535613	regulatory region 535613	112 bp distal
Rr535614	regulatory region 535614	176 bp proximal
Rr535615	regulatory region 535615	1095 bp proximal
Tssr150444	transcription start site region 150444	550 bp downstream
Tssr150445	transcription start site region 150445	505 bp downstream
Tssr150446	transcription start site region 150446	461 bp downstream
Tssr150447	transcription start site region 150447	361 bp downstream
Tssr152786	transcription start site region 152786	152 bp downstream