rs47087094 SNP Detail

Summary

• ID
  rs47087094
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:190955744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACGAACCA ACCTGCTCTC
  TGATCTCCAC AGATACACTG TAGCACTTGC TCCCATACTC ACCCACATAC ATGTAAATAA
  ATAATTTTTA AAATCCCATA CATGTATACA TATAGAACGC ATGTTCTTTA ACCATGTATC
  TGTTGATTGC CATCTGGGTT AGTTCTTTAT TTAGCTATTG TGAATAGTGC AGCAATAAAC
  W
  TGGGTGTATT GGTGTCTTTG TGATGTGCTG ACTTAGAATT CCTCCGGATT TATCAATTTG
  TATGTGTGCG CGTGCATGTG CTTGTGCACG CGAACTGCTT AAGACCCTCT ATTCCTCACA
  GGCCACAAGA TCTCAGGCAG GTGATCTCCC CTGAATGAAA GTAAGAAAGC TCACTGCAGG
  TGCCTGCACC AAGAAGTGGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146503192	ENSMUSSNP2717730	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs47087094					SNP	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190955744 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1220	CpG island 1220	296 bp proximal
D730003I15Rik	RIKEN cDNA D730003I15 gene	907 bp upstream
Gm70871	predicted gene, 70871	173 bp downstream
Rr26272	regulatory region 26272	1068 bp distal
Rr29193	regulatory region 29193	256 bp proximal
Rr396715	regulatory region 396715	605 bp upstream
Tssr372	transcription start site region 372	1300 bp downstream
Tssr10744	transcription start site region 10744	896 bp upstream
Tssr10745	transcription start site region 10745	915 bp upstream
Tssr10746	transcription start site region 10746	1499 bp upstream
Tssr10747	transcription start site region 10747	1893 bp upstream
Tssr15770	transcription start site region 15770	1364 bp downstream
Tssr15771	transcription start site region 15771	1429 bp downstream
Tssr15772	transcription start site region 15772	1712 bp downstream
Tssr15773	transcription start site region 15773	1725 bp downstream