rs47088478 SNP Detail

Summary

• ID
  rs47088478
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:16853689 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCCATGCT AAGGTTGCTC
  GTGGCTCTTT TATAGAGATT CTTAACCTAT TCAGATTACA TTGTCTATCC TAAGTAGCTC
  TCTAGAATCA AGAAACCAAC TCCATTATAC TTATTGGGGT GTCAACTTAG CACTTAATAC
  CTAACTTTCT ACTTCTTTTC TTCACATTAT AAAGGCTATA TCATAATGCA AAATACATTA
  Y
  TTTCAAAAGT TCCCATAATC AAACAAATAC AGAGACTAAA TGACAGACAA TATGCAGAGA
  CTAAGAGACC TTGAAACACT CAGCCCTAAA TAGTGTACAT CCAACAAATT CCTCCCTTTT
  GGGCTTAGGG AATTCTACAG ATCTATTGAA GAGGGGGCAG AAAGAGCGTT AAGAGCCAGA
  GGGGATATAG GCCTCAAAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ
ss52152687	NES15235050	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ
rs47088478					SNP	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52152687	NES15235050	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:16853689 () rs orientation: forward

Symbol	Name	Function Class
Gm20125	predicted gene, 20125	within coordinates
Gm66102	predicted gene, 66102	1617 bp upstream
Rr427987	regulatory region 427987	869 bp proximal