rs47090244 SNP Detail

Summary

• ID
  rs47090244
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:124020429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAACATAAA ATCATGAGCA
  CTCTAGACTA TTAGCCAAGA CAAACATATT TTGTCAATTA TAATGCCCTT TAAAAATTTA
  AAACTGTGTT TATTTTATGT TTTTCTTATG TGTTTTATGC TTGTAGTTTT TGCTGATACA
  CATTCTACAC TGTTATGTGA TAACATAAAG TATTTTCACA ATGGTACCTA TAAATAAGTG
  R
  CATGTTTAAG GTTTGAATTC AGTGGACATT TACAAAATAT CATAAAATAT AAATATATGA
  ATTGATTCCT TCACTTAGAT AGGAAGTTTC ACTTTTGTGC CTGGTTATGC GATAATGTGA
  TGTGGTACTA ACACTGCTTA CCACAAAGCT TCTCCAGCAA TGGTACAAAG TAGGAAAGAG
  TGTTCTAGAA CAATTTTATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135782616	ENSMUSSNP2116295	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47090244					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:124020429 () rs orientation: forward

Symbol	Name	Function Class
Rr584579	regulatory region 584579	580 bp distal