rs47090848 SNP Detail

Summary

• ID
  rs47090848
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:65842482 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTCTGTA TGTATGTGTC
  TGTCTCTTTG TGTATGTAAA TGTCTGTCTC TCTGTGTGTG TCTGTCTCTC TGTGTCTATT
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTAGGAT CAGTGCAGAG GAGCAGGAGG
  CCCATTGTGG GTTGATGTAG AGAAATAGGA TTGCTCTAGT CCTAAGATAG CTTAGGTCCA
  Y
  ATCCAAGCAA TGACTGTCCC ACTGCCCAGT CCAGGTCAAC AACCACCAAC TGAAAAGTAT
  TTCTTGGAAC CTAGAAAAAA AAGTTTCAGG AAAGTCAGAC ACAGCGCAGG TCTCCTGGTG
  GAAGGTCTCC AAACCATCCT GGTATAACTC AACCATGATT GGACATTACC AACCCAGGTA
  ATACGGCCAT GGTGCCTGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60417523	NES15922135	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs47090848					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60417523	NES15922135	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65842482 () rs orientation: forward

Symbol	Name	Function Class
Gm37037	predicted gene, 37037	1153 bp upstream
Rr76050	regulatory region 76050	1072 bp distal
Rr76051	regulatory region 76051	83 bp proximal
Rr76052	regulatory region 76052	1270 bp proximal