rs47090989 SNP Detail

Summary

• ID
  rs47090989
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:69829907 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCTTGTGG AGTGGTTGAA
  CCGTAGCTTC TCATTCTGTC ATCGTCATCT GTGTGTGCTG TCCTAGATCC TCTCCTCTCC
  TCTCTTAATC CAGCTACACC GTAGAGAGCT AGGGAAGCAT GCTTACACTG GAGTCATCCG
  AGATGGGAAC GGTTTTCTTT TCTCTTGTGC TCGTGGGTAT GACTCTGTCA GAGCCAAGGC
  M
  CAGACTGTCA GATTCCATCG TAGTGGCCGC CGCCCACGCG TGACTCTTTG ACCCGTGGCG
  AGGGGGCAAG CTCGCCAGCA TGTTCGATCT CATTACATTC CGAGCATCCA TGTAATCTGG
  CATTCAGCCT GAGGCGGGTG ACAGACGAAT CCCTTGCGTA GGTGACTAGG ACACATCTGA
  GTACACAGCA TTAGTAATGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61285369	NES16895481	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47090989					SNP	A	A	A	A	A	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61285369	NES16895481	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:69829907 () rs orientation: forward

Symbol	Name	Function Class
Ank3	ankyrin 3, epithelial	within coordinates
Tssr93978	transcription start site region 93978	960 bp downstream
Tssr93979	transcription start site region 93979	777 bp downstream
Tssr93980	transcription start site region 93980	312 bp upstream