rs47091150 SNP Detail

Summary

• ID
  rs47091150
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:72322750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGGCAGGG TTTCTTTGTG
  AAACCTCGAC TGACTTGGAC CTCGATCTGT AGACCAGGCT AGCCTGAAAC TCACAGAGAT
  CCACCTGTCT CTGCCTCTTG AGTGCTGGAA TTAAAGTCAT ATGTCACCAC CACCTGGGAA
  CAGTTTGCTT TGGGTTAAGA GTAAACCCAA AACCCGGACA TGGTGGCGCA CGCCTTTAAT
  Y
  CCAGCACTCG GGAGGCAGAG GCAGGCGGAT TTCTGAGTTC GAGGCCAGCT GGTCTACAAA
  GTGAATTCCA GGACAGCCTG GGCTAATAAA AAGAAACCCT GTCTAGAAAA AAACAAAAAA
  AACAAAACAA AATAACAAAA AAAAGTAAAC CCAAAGAAGA TGCACATTCT CACATATTTA
  AATATTAAAT GTAACTATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss144651936	ENSMUSSNP7137890	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs47091150					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:72322750 () rs orientation: forward

Symbol	Name	Function Class
Cpgi355	CpG island 355	445 bp proximal
Pecr	peroxisomal trans-2-enoyl-CoA reductase	within coordinates
Rr412794	regulatory region 412794	605 bp distal
Rr412795	regulatory region 412795	658 bp proximal
Rr412796	regulatory region 412796	789 bp proximal
Tmem169	transmembrane protein 169	804 bp upstream
Tssr114	transcription start site region 114	681 bp downstream
Tssr115	transcription start site region 115	697 bp downstream
Tssr116	transcription start site region 116	714 bp downstream
Tssr7298	transcription start site region 7298	776 bp upstream
Tssr12164	transcription start site region 12164	633 bp downstream
Tssr12165	transcription start site region 12165	657 bp downstream