rs47091239 SNP Detail

Summary

• ID
  rs47091239
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28948220 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAGGGGG TGAGACTAGT
  CATCAGTTGG TCCCTTTGCG GGGGTACTTG CTTCCGGAAA GCCGTTCCGT ACACTGAACA
  AAGTTAAAGT GCATTCTGGG AGCAACGAGG TCTGGTTCTC AGCTCCTCCG AGCTGAGATA
  AGTAGTGTCT GAAGAATTTG GTGGCCAGAC TAGTGCGCCC TGGCGGCAGC TGAAAAGCAC
  Y
  AGCAAAGTTG TACCCTGGGG TGGTGGGGTT GAATTCCTAG GCTGGTGCTT GGCAGAGTGC
  ATGGTGGTGA AATGTGTTGC GTTGTTTGGG TAAAGGCAGG TGTCTTAATT TGGGCTGTTA
  AACATAACAG ATTAGTGCTT AAGCAGCAGT TTACCTCATA GTCGGCAAGG CTCGGGGCTG
  GAAGCTAGGC ATAGGCAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60986963	NES16139355	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47091239					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60986963	NES16139355	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28948220 () rs orientation: forward

Symbol	Name	Function Class
2200002D01Rik	RIKEN cDNA 2200002D01 gene	328 bp upstream
Cpgi18753	CpG island 18753	609 bp distal
Gm73451	predicted gene, 73451	610 bp downstream
Tssr65618	transcription start site region 65618	1125 bp downstream
Tssr71635	transcription start site region 71635	1657 bp upstream
Tssr71636	transcription start site region 71636	1050 bp upstream
Tssr71637	transcription start site region 71637	856 bp upstream
Tssr71638	transcription start site region 71638	823 bp upstream
Tssr71639	transcription start site region 71639	371 bp upstream
Tssr71640	transcription start site region 71640	327 bp upstream
Tssr71641	transcription start site region 71641	262 bp upstream
Yif1b	Yip1 interacting factor homolog B (S. cerevisiae)	1198 bp downstream