rs47095382 SNP Detail

Summary

• ID
  rs47095382
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:91401422 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGCCTGGT GAGAAAAGAG
  TTAACTCTAA GAGAGCTTGC AGACAAAGTG GATAGAAGTC TGGAATCTGT GGCTTTAAAT
  TACGCATTGA GTCCTTTGGA CATTTACATT TCTATCCCCG TTATATTTCC ACCACAGATT
  TGTTTTAGAG TAGAAATACC AGATATTTTT ATTTCGGTAT CATAGACTTG ATAGCCTCAG
  M
  CTCAAATGCT GAGGTAAGAC TATTTTCTGC CTTCAGACTC TTTAAAGCAA GAATGTAAGA
  GCTAGGCAAA TTCAGGAGAA TTGAGATTTC CACATACAAG ATTTTTTTTT CCATCCAGAA
  AAACCAGAAC TCTCTCCTAA ATATTAGCAT GTTTACACTT CTGCTACTTT TGTTCAAATA
  TCTAAGTAAC CTCAGACTTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60293384	NES15791747	PERLEGEN	MM_PANEL2	f	SNP	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47095382					SNP	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60293384	NES15791747	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:91401422 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9653	CpG island 9653	1025 bp distal
Nrxn1	neurexin I	923 bp upstream
Rr334029	regulatory region 334029	822 bp distal
Rr340336	regulatory region 340336	within coordinates
Tssr149870	transcription start site region 149870	1172 bp upstream
Tssr149871	transcription start site region 149871	1136 bp upstream
Tssr149872	transcription start site region 149872	1117 bp upstream
Tssr149873	transcription start site region 149873	999 bp upstream
Tssr149874	transcription start site region 149874	965 bp upstream
Tssr149875	transcription start site region 149875	917 bp upstream