rs47096119 SNP Detail

Summary

• ID
  rs47096119
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44840892 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGCTTGG TTAGGAGGTG
  GTGCCTGGGC TGAGCCTCCC CAGGGGAGAC ACTGAGGTCA GGAAAAGGCA TCCACAACAG
  CTCTCCAGTG TGACCGAAGC TGGGTGTGAG GAAATGCAGC TGTCATCTCA GCACCAGGCA
  AGCTGATGTA GGAGGATAAC TTTTAATACC AGGCCAGCCT GGGCTATATA ACAAGACCTC
  R
  TCTTAAAAAA CAAAAACAAA GCTGGGCAGT GGTGGCACAT GCCTTTAATG CCAGCACTCA
  GAAGGCAGAG GCAGGCAAAC CTCTGAGTTC GAGGCCAGCC TGATCTATAG AGCAAGTTCC
  AGGACAGCCA GGGTTACACA GAGAAGACCT GTCTTAAACA AACAAATGAG CAAACAAACA
  AACAAATGAA TATGACAATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss149131083	ENSMUSSNP5752607	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs47096119					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44840892 () rs orientation: forward

Symbol	Name	Function Class
Gm31097	predicted gene, 31097	324 bp downstream
Kash5	KASH domain containing 5	within coordinates
Rr646366	regulatory region 646366	233 bp proximal
Rr646367	regulatory region 646367	1746 bp proximal
Tssr72335	transcription start site region 72335	1902 bp upstream
Tssr72336	transcription start site region 72336	1818 bp upstream
Tssr72337	transcription start site region 72337	1755 bp upstream
Tssr72338	transcription start site region 72338	1659 bp upstream