rs47096119 SNP Detail

Summary

• ID
  rs47096119
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:44840892 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGCTTGG TTAGGAGGTG
  GTGCCTGGGC TGAGCCTCCC CAGGGGAGAC ACTGAGGTCA GGAAAAGGCA TCCACAACAG
  CTCTCCAGTG TGACCGAAGC TGGGTGTGAG GAAATGCAGC TGTCATCTCA GCACCAGGCA
  AGCTGATGTA GGAGGATAAC TTTTAATACC AGGCCAGCCT GGGCTATATA ACAAGACCTC
  R
  TCTTAAAAAA CAAAAACAAA GCTGGGCAGT GGTGGCACAT GCCTTTAATG CCAGCACTCA
  GAAGGCAGAG GCAGGCAAAC CTCTGAGTTC GAGGCCAGCC TGATCTATAG AGCAAGTTCC
  AGGACAGCCA GGGTTACACA GAGAAGACCT GTCTTAAACA AACAAATGAG CAAACAAACA
  AACAAATGAA TATGACAATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss149131083	ENSMUSSNP5752607	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs47096119					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44840892 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm31097	predicted gene, 31097			324 bp downstream
Kash5	KASH domain containing 5			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr646366	regulatory region 646366			233 bp proximal
Rr646367	regulatory region 646367			1746 bp proximal
Tssr72335	transcription start site region 72335			1902 bp upstream
Tssr72336	transcription start site region 72336			1818 bp upstream
Tssr72337	transcription start site region 72337			1755 bp upstream
Tssr72338	transcription start site region 72338			1659 bp upstream