rs47096152 SNP Detail

Summary

• ID
  rs47096152
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:83723119 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGCATATA GTTACAAATG
  AGATAATAAC CTTAGCTTTT TTGCACCACG TATTTCTTAC CAGTGACCGT CATTCGCGAG
  GATTGTTCTA ATGAAGAGTT TAAGAGCTTC AGGAGGAAGT GCTCTCACTG CTAAGCGATG
  CTTAAACATA AGAGGAAACA CCCCATATTA CTTTTCCTGT GCTCCCTGGC AGTGATCTTC
  R
  TAAAATAAGA TTAAAGGATT TAGTTTTAAA TTAGTTGACA TTTACATATA TCAAAGAGCA
  CTTCCATAAT CGTCCATCTT ATTTGCATAA CTAGGGGCGT TATCACCTCT GCTGTCAAAA
  CACGAGATTG TTTTCCATTC AGAAATGAAT TAGATGCCCT ACTTAGCATA CACAGGTATA
  TAAAGGTTCA TTAACTCTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61892650	NES17096061	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G	G	G	G	G	G		G	G	A	G		G
ss324456697	CHEV_13_83714158	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs47096152					SNP	A	G	G	G	G	G	G	G	G	G	A	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61892650	NES17096061	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:83723119 () rs orientation: forward

Symbol	Name	Function Class
Gm55122	predicted gene, 55122	within coordinates
Mef2c	myocyte enhancer factor 2C	Intron
Rr1598	regulatory region 1598	878 bp downstream
Rr483253	regulatory region 483253	1368 bp distal
Rr483254	regulatory region 483254	437 bp distal
Rr483255	regulatory region 483255	within coordinates
Tssr120505	transcription start site region 120505	1397 bp downstream
Tssr120506	transcription start site region 120506	516 bp downstream
Tssr120507	transcription start site region 120507	139 bp upstream
Tssr120508	transcription start site region 120508	625 bp upstream
Tssr123330	transcription start site region 123330	within coordinates
Tssr123331	transcription start site region 123331	653 bp downstream