rs47096397 SNP Detail

Summary

• ID
  rs47096397
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153616670 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAAACAGAA TCCTTACACC TTGATGGTTT TTCTTTCAGA
  GCCAAAGAGT TCAAGACGCG GCTGGGAATC TTTCTTCATA AATCAGAGCT GAGCTCCGAT
  R
  CTGGGGGTAT TAGCAAATTC GAGTGGGCCA GTAAGCATAA CAAAGAGAGG TAAGTCCTAT
  TGTCTGTCCA GCCCTGGGGC TTTAGAGGGG AGAAGGCCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss145749143	ENSMUSSNP4293847	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs47096397					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153616670 () rs orientation: forward

Symbol	Name	Function Class
Cpgi870	CpG island 870	320 bp distal
Gm28513	predicted gene 28513	within coordinates
Rgs16	regulator of G-protein signaling 16	within coordinates
Rr420742	regulatory region 420742	715 bp distal
Rr420743	regulatory region 420743	565 bp distal
Rr420744	regulatory region 420744	1667 bp proximal
Tssr9477	transcription start site region 9477	564 bp downstream
Tssr9478	transcription start site region 9478	384 bp downstream