rs47096846 SNP Detail

Summary

• ID
  rs47096846
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:57072189 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGCACTGT GGAATCTGCT
  AAAGTCAGAC TGACTCCTTG GTTTAGAGGA GCGTTGGGTT CTTTGTATAA GTAGGCATAT
  GAAGAGAGCA GTTAGCGGCT GGGGGATGTA GCTCAGTGGT AGAGCGCGCG CTTCGCATGT
  GTGAGGTCCC GGGTTCAATC CCCGGCATCT CCAAGCAGCC GGAATTCTGT TTTTCATTCT
  Y
  TCTCAAAGAA AAGATTTTCA CTTGTACATT TTGCCCACCA CTACAACATC GAAAACCGAA
  AACAAAAAGG CCGTGAAAAA TCTGCAGTGT GGAAAACTCA CTCTAGTGAT TGCTGGGAAA
  ACAAGTGAAA CGAAATGCTA GGAAGAAAAA TTCGTAGTTT CTTTCTTCAT TAATGTTAAT
  ATTTTAGAAA AACAAGATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss146633814	ENSMUSSNP6970268	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs47096846					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:57072189 () rs orientation: forward

Symbol	Name	Function Class
4930555B11Rik	RIKEN cDNA 4930555B11 gene	within coordinates
BB557941	expressed sequence BB557941	423 bp upstream
Cpgi11661	CpG island 11661	32 bp distal
n-TAcgc8	nuclear encoded tRNA alanine 8 (anticodon CGC)	28 bp downstream
n-TGgcc8	nuclear encoded tRNA glycine 8 (anticodon GCC)	217 bp downstream
Rr396968	regulatory region 396968	within coordinates
Rr557184	regulatory region 557184	435 bp distal
Rr557185	regulatory region 557185	359 bp distal
Rr557186	regulatory region 557186	within coordinates
Tssr24122	transcription start site region 24122	415 bp upstream