rs47096893 SNP Detail

Summary

• ID
  rs47096893
• Variation Type
  SNP
• Alleles
  A/G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:121421197 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTGT GCCACGGCAT GTATGAGACC
  D
  CGCGCGCGCG CGCACACACA CACAC                                      
  
  D = A/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147637485	ENSMUSSNP5462044	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss323513538	CHEV_10_121022348	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47096893					SNP	T	T	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:121421197 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2289	CpG island 2289	955 bp proximal
Rr402304	regulatory region 402304	580 bp upstream
Rr402305	regulatory region 402305	1434 bp upstream
Rr440247	regulatory region 440247	within coordinates
Rr440248	regulatory region 440248	1485 bp proximal
Tbk1	TANK-binding kinase 1	within coordinates
Tssr96043	transcription start site region 96043	925 bp upstream
Tssr96044	transcription start site region 96044	961 bp upstream
Tssr99623	transcription start site region 99623	581 bp downstream
Tssr99624	transcription start site region 99624	609 bp downstream
Tssr99625	transcription start site region 99625	630 bp downstream
Tssr99626	transcription start site region 99626	1418 bp downstream
Tssr99627	transcription start site region 99627	1438 bp downstream
Tssr99628	transcription start site region 99628	1521 bp downstream
Tssr99629	transcription start site region 99629	1549 bp downstream
Tssr99630	transcription start site region 99630	1577 bp downstream