rs47096988 SNP Detail

Summary

• ID
  rs47096988
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:66372362 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCCTTAGA CGCCCATTTT
  AGGTTTAAGG TCAAAGAAAG GGAAGACATC CAAGGACTAG GAGAAGCCCC AGCTATCCGC
  GGATCTGGAG GAAAGGGGAG GGGAGATGCC TGTCTTTAAC CTTGGAGTCC TGCAAATTTA
  CATGGATTAA AACCTATCAA CTCCATTACC CCTGTACAGA TTAGCCTCTT AGGGCCCTTA
  R
  ACACTCAGTG CAGGTCTTCA TATTATGCAG ACCTGTCTCC GGTGGGCAGA ACAAAAGGAC
  GGACGTTTAA ATATCAGCAT TTAAATCTAA GCGAGAACTC TGAAGAGGCG GGGAGGTCCT
  GGGTAGTTCC CAGCCTCTTA TTTACCTCTT AAATATTCCT TTCTTACCAC ATTTATTTTT
  AAGCTTATTA ACATCAACTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61174717	NES16683996	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47096988					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61174717	NES16683996	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:66372362 () rs orientation: forward

Symbol	Name	Function Class
Gm3822	predicted gene 3822	within coordinates
Gm73278	predicted gene, 73278	within coordinates
Gm73415	predicted gene, 73415	474 bp upstream
Rr378070	regulatory region 378070	within coordinates
Rr612424	regulatory region 612424	584 bp proximal
Tssr46528	transcription start site region 46528	740 bp upstream
Tssr51198	transcription start site region 51198	474 bp upstream