rs47097375 SNP Detail

Summary

• ID
  rs47097375
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85438662 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTAAAACTAA GTTAAAAAGC ACTGTTTAGA GAATGATAAA
  ATTGCCAAAA TTTTCTTTTC TTCCCTCATT CTATTGTCCT GTCTCCATCT GGTGCTCCAA
  R
  GATCAGCTAA AGTCATTGGT TACTGTGGAA ACCACTCCTG ATTGTCCCCC TACCGCCTTC
  TGCCTGCCCC CAGGCCCAAA GGCTCCTGCT CTGGAGTGTC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss60644199	NES16268971	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G	A	A	A	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs47097375					SNP	G	A	G	G	A	A	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60644199	NES16268971	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85438662 () rs orientation: forward

Symbol	Name	Function Class
Nfix	nuclear factor I/X	within coordinates
Rr178193	regulatory region 178193	462 bp distal
Rr178194	regulatory region 178194	539 bp proximal
Rr187003	regulatory region 187003	within coordinates
Tssr82128	transcription start site region 82128	1760 bp downstream
Tssr82129	transcription start site region 82129	1779 bp downstream
Tssr82130	transcription start site region 82130	1800 bp downstream