rs47097675 SNP Detail

Summary

• ID
  rs47097675
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26756456 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGAAGAAGG GAGGGAGGGT GTGCTCTTGA TGGAGATGCT
  GAGGTCTTGG CCATTTTCTT TACTCCTTTG TTTCCCACTG CTGTGAGGTG GACAGCTGTG
  Y
  TCCCATTGTG CACCTCTGCC ATGATGTGCT GTGTCGCCAT CATGGGTGGA CTAGGACCTC
  AGCAAACGTT TTCTTGTTAG CAAGGGCTTA TACACTCCAC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60554805	NES16569674	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47097675					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60554805	NES16569674	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26756456 () rs orientation: forward

Symbol	Name	Function Class
Gm34606	predicted gene, 34606	1118 bp downstream
Gm50275	predicted gene, 50275	within coordinates
Gm64855	predicted gene, 64855	1723 bp downstream
Rr405114	regulatory region 405114	568 bp upstream
Rr523873	regulatory region 523873	1356 bp distal
Rr523874	regulatory region 523874	310 bp proximal
Rr523875	regulatory region 523875	748 bp proximal
Tssr5050	transcription start site region 5050	1646 bp downstream
Tssr143246	transcription start site region 143246	848 bp upstream