rs47097901 SNP Detail

Summary

• ID
  rs47097901
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:81933631 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGA TGGCTATGAG CTGTCATGCG
  R
  GTTATAGGAA TTGAACCTGG GTCCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss133338048	ENSMUSSNP4110303	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G		G
ss321840569	CHEV_6_81906644	CHEVERUD	SCREENING_POP	f	SNP				A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs47097901					SNP	A	A	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:81933631 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gcfc2	GC-rich sequence DNA binding factor 2			Intron
				Noncoding-Transcript-Variant
Mrpl19	mitochondrial ribosomal protein L19			1201 bp downstream
Rr632566	regulatory region 632566			44 bp distal