rs47098275 SNP Detail

Summary

• ID
  rs47098275
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:182095041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTCCCATG AGTATTCTGA
  GTGGCTCTCT AGAGCATGCG CTGGCCATCC ATTATATTCC CAGTTCCCCA CAAGCACTGG
  AGCTAGCACC AGCCAGAGCA GAGCCTTTCA CAGGTCACTC TGCCAGGTGA TATTTATAGC
  ACAAGCCTTT ACATTTTTCA TGATTGTGGG TTTTGCTATA AGTGGACTTT TGGGTAGGCA
  Y
  GAGCAAATTC GCTCTACTGT CTTCCTGGCA CTTTTTTTTT TTTAATCTGG AATCTGAGGG
  GTTTTCAGGG CCACCTCCAT CCTAGGGCCT TGAGACTTAC TTAGAGAATG ACACGGGAGA
  GGTGATGTGA CATCACTGAG ACCTAGCAGC AGTTTCTGAG CAGAGCCACT TAAGACAATG
  ACCCTTCATG TAGACTTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60352044	NES15855445	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47098275					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60352044	NES15855445	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:182095041 () rs orientation: forward

Symbol	Name	Function Class
Gm33887	predicted gene, 33887	1444 bp downstream
Rr424897	regulatory region 424897	630 bp proximal