rs47098657 SNP Detail

Summary

• ID
  rs47098657
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:133866119 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATCATCCTA CTGATATGAG ACTTAAATGT TAGTTTAATT
  GGGCATGGCT TTTACCCTGG ATTTCCTCTC CCCCCCCCCC CGCTTAGCAA AAGCTGACTC
  Y
  AGGGCCCATG CACTAACCAC CCACATTCCT TGGTTAAATG AGGCTGCCAG ATACTCTGTC
  ATCAAACTTA CAGCTTTGGA AAGTTACGAT ATCTAAGCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ZALENDE/EiJ
ss404657394	MGP_WTSI_X_131499909	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	T	T	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ZALENDE/EiJ
rs47098657					SNP	C	C	C	C	T	T	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404657394	MGP_WTSI_X_131499909	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:133866119 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22945	CpG island 22945	1353 bp distal
Nxf2	nuclear RNA export factor 2	616 bp upstream
Rr693643	regulatory region 693643	1485 bp distal
Rr693644	regulatory region 693644	1384 bp distal
Tssr164159	transcription start site region 164159	644 bp upstream
Tssr164160	transcription start site region 164160	603 bp upstream