rs47100713 SNP Detail

Summary

• ID
  rs47100713
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70416406 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAAGTCTCC ACAGGGGTGA GGAAAGAGCC AGAGTTCGGA
  AGACATGTAC TAGGCCTGAC GGGAGGAAAA ACATGAAGCC CGAGTGGGTT TGACTGAGTG
  K
  GTTGGGGGGG GGGGAGCGCT GTGTTCTGCG AGAGGGAGAG GGATTCCTTG AATGCTGGCG
  TGGGGTGATA CCTTTCGTGA TGAGAGGTGA ACAGTAGGC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss132372304	ENSMUSSNP6130884	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss323735954	CHEV_11_70339082	CHEVERUD	SCREENING_POP	f	SNP		G	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs47100713					SNP	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70416406 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3188	CpG island 3188	38 bp distal
Psmb6	proteasome (prosome, macropain) subunit, beta type 6	within coordinates
Rr369269	regulatory region 369269	196 bp downstream
Rr450321	regulatory region 450321	1990 bp distal
Rr450322	regulatory region 450322	184 bp distal
Tssr102728	transcription start site region 102728	186 bp downstream
Tssr102729	transcription start site region 102729	329 bp upstream
Tssr102730	transcription start site region 102730	374 bp upstream
Tssr102731	transcription start site region 102731	401 bp upstream