rs47101391 SNP Detail

Summary

• ID
  rs47101391
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:45607894 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTACCTTG ACAAGGGATC
  CTAAGATTTA GAAGCTGAAA CAGGTATGAA AGGTTTTTCT AGCCAAGCTT ATTTCCCAAG
  TGAATTTAAG GTAACACAGA ACAGCTTCAT ATTATTACTT AGCATAGCAA GACATCAGGG
  ATACAGCAAC TGTCTTGAGT ACACACGTAG TCCCATCTTC CACAAACCGT CTTCCAAGAC
  S
  TTGCCAGATT TATGCCCAGA GAAAAATACA CAAGTCAAAA AGGTAGGTTC CCGCAGACCA
  AATTATGATG TATGAAAATC AGGAGTGAGC TGGGTTCAGG CGCTGGGTAT CATCACCCTC
  ATCCCCCCCC CCCAGCCCCC CACTCCCCAC CCCCGCCTCC CTACCCCCGG CTTTGCTGAG
  TCCTGTGGTA CTAGCAGCTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52410585	NES15387136	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	G	C	C	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47101391					SNP	C	C	C	C	G	C	C	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52410585	NES15387136	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:45607894 () rs orientation: forward

Symbol	Name	Function Class
Rr267454	regulatory region 267454	within coordinates