rs47101397 SNP Detail

Summary

• ID
  rs47101397
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:84372722 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCACCCCTG CTCTGTATGT ATTTGAGGCA GCCTCATTGA
  AGTGAATGTG TCTGTGGGGT AGTGTGGAGG GGAAGCTCTG GCCTAAATGA CTTTGAAAAT
  K
  CGTGAACTGT GTTAAGACAG GTAACTAAAG AAACCATGCC TAGGTGCTGT CTCTAGTTGA
  TAAAACTTTC CCTTGGAGCA AGGATTCACT AGTCCAAAG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146129363	ENSMUSSNP2603266	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47101397					SNP	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:84372722 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9563	CpG island 9563	1801 bp proximal
Gm35551	predicted gene, 35551	within coordinates
Gm65795	predicted gene, 65795	within coordinates
Rr531968	regulatory region 531968	1235 bp distal
Rr531969	regulatory region 531969	1009 bp distal
Rr531970	regulatory region 531970	1810 bp proximal