rs47103434 SNP Detail

Summary

• ID
  rs47103434
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:82720063 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGACTATT CCTGCAATAT
  TTATTTCAGA ATAAAGAACT CAGAACCTCT AAGTCACAGA GGAAACAAGA ATATGGTGGA
  ACTTTAGAAC CCAGGTGAAT AAAAAACCCT GCTGAAGTGG TGCATGGGCC AGGCACAGAC
  AGGCAAGACT TCACAAGGTG GGAACTAACT CCCAAGTGCT TTGAATCCTA AGGGACATAT
  W
  TACCCCTATC CTTCAAGGCA GTACTCAGAA TGTGGGTAAT GGATAATATA GATTTCATAG
  ATGGGAATTT TACCTGGTAG ATAACATTTA AGAAGATAAA ACCAGTTTGG GGGGAAGGGA
  GTTGTTCCCA AATGTTTTAG TCTGGCTTTC AGTGAGACTG GTCCTTAAAT CCTGGCTGTC
  ATGCTGAGTG TGCTTGAATG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss132459749	ENSMUSSNP7005131	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs47103434					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:82720063 () rs orientation: forward

Symbol	Name	Function Class
29.MMHAP71FLB5.seq	DNA segment, 29.MMHAP71FLB5.seq	1784 bp proximal
D11Pas73	DNA segment, Chr 11, Pasteur Institute 73	47 bp distal
Gm72007	predicted gene, 72007	within coordinates
Rffl	ring finger and FYVE like domain containing protein	within coordinates
Rr386369	regulatory region 386369	within coordinates
Tssr103583	transcription start site region 103583	1471 bp downstream
Tssr103584	transcription start site region 103584	69 bp downstream
Tssr109581	transcription start site region 109581	195 bp upstream