rs47103630 SNP Detail

Summary

• ID
  rs47103630
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:158525685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGCTTGCT TGCAGCATTT
  CAAAAGCTGC TCACAGAGTT CCAAAGAAGG AATGACACAG TAGCTTACTA ACAGCTAAGC
  AACGTGAAGA CTACACAGGA GTCTTACCTT AGAAGGTACT TGGTGCAATG CCGGAAGCAT
  GTCACGTGCT CAACAGTGTG GTGTTCTGGC GCCCTCTTCA AACCTATTCA TAATTTCCTA
  R
  ATGTCATCCC GTGACAACAT GGTTGGGCTG AAGAAATCAT GTTCCAATTT CACATCATGT
  ATCTTTTTTT ATTTTAAATA TGGCAAAGGT CTTGTTCAAA TTTTTATATT GAACTTCCTT
  GAAGACGTTT TACTATGTTG CACAAAGCAT CTTTTAAAAC AATAAATTTT GAAATTGTAA
  TATAATTACA ACATTTCAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60333200	NES15837275	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47103630					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60333200	NES15837275	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:158525685 () rs orientation: forward

Symbol	Name	Function Class
Gm53639	predicted gene, 53639	1348 bp upstream
Rr421480	regulatory region 421480	451 bp distal
Rr421481	regulatory region 421481	1164 bp proximal