rs47103799 SNP Detail

Summary

• ID
  rs47103799
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170795982 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGACCACAG CCTTTGGAAG
  ATCTGCTCAA TTTTGGAGAG AGCAGGCAGT GTGAGGCAAG GAAGCCCCAA GAACCTCAGC
  AGGCCCCAAG TTTCTGCTAA AAAGACACCA GCATTCCTAC TGAGAGCACC AAGGGTGGGA
  CCAGGCCCAG GAAGCTTCTT CCATTGAATT CTTCTACTTA TTCCATCCTG TGAGCCCCAG
  R
  GAAATCACAA GGAGTGTAAT TGATCCTCAG CAGGGTAAAG CAAGAGAGAA GATAGGAGGG
  GGCAAAGGAG ACACCCCAGA AATATCTCTC ACCAAGATAT ATTTCCATTT CTCTTCTCCA
  TCCCTCCTGT CACTCCCCCC TACCCCACCC CCCCAGTTGC AGATGGATCT CTAATCAGAA
  GAACAGGGCA TGGAGCTCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60345261	NES15845057	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47103799					SNP	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60345261	NES15845057	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170795982 () rs orientation: forward

Symbol	Name	Function Class
D1Dcr16	DNA Segment, Chr 1, Derry C. Roopenian 16	1450 bp proximal
D1Mit148	DNA segment, Chr 1, Massachusetts Institute of Technology 148	1470 bp proximal
Fcgr2b	Fc receptor, IgG, low affinity IIb	within coordinates
Rr20521	regulatory region 20521	within coordinates
Rr372438	regulatory region 372438	within coordinates
Tssr14957	transcription start site region 14957	1890 bp upstream
Tssr14958	transcription start site region 14958	188 bp upstream