rs47103885 SNP Detail

Summary

• ID
  rs47103885
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:41339885 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCCTTTA AGGGTTATCA
  GCGCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTG TTCTATCAGA
  GATCCTATTT TCTACATAAC TACACTCTTT CTAAATAAAA GTAGGAAGTT CATATAAATG
  GAGTATTGTT GGTGTTCCAA GATCAAAATT TCCAAACATC TATCTTTGGT GTATGTTACA
  R
  AAGTAAATAA ATAATAGCCC CTTTCTCCCA ACCACCCACC AACCATGGAG TGCCTGGTCT
  GTAGTGGGCA CTTAACATAT GTGTCTCATG GGATCTTTAC AGAAGCCTGA TAAGAACAGT
  GTTGCCTTCA TCTGGCCAGT CAGAAAAGCA GATATCAGCA TTGAAAATCT ATCTCATCTA
  CAACCCCGAG CTGTGTCTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60601057	NES16305980	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47103885					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60601057	NES16305980	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:41339885 () rs orientation: forward

Symbol	Name	Function Class
Rr662620	regulatory region 662620	148 bp proximal
Slc7a2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	within coordinates
Tssr76993	transcription start site region 76993	1205 bp downstream
Tssr76994	transcription start site region 76994	202 bp downstream
Tssr76995	transcription start site region 76995	1004 bp upstream
Tssr76996	transcription start site region 76996	1059 bp upstream
Tssr76997	transcription start site region 76997	1168 bp upstream
Tssr76998	transcription start site region 76998	1553 bp upstream
Tssr81068	transcription start site region 81068	251 bp downstream