rs47103998 SNP Detail

Summary

• ID
  rs47103998
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:177148672 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGAGGGCA TGCGTGGTGC
  AAAGTGCCCT TGTTCCGTAT TTATAACCAA GGCTGCAGGG ATGTCATATG ATACTCAGTG
  AGCAACTGCT TCAGGAAATG CTTTGACTTT GTTATGGTTT GGTTTTTAAT TCATTTTTGG
  TCATTCTGGG TTCAGAAACC CTTCTACTGT TGCCAATTAC ATGGACACCC CCCCCCCCCC
  M
  CACACACACA CACAGGTGAA TATGAAACCC TGTATGTGAT CATGCCTACA CATGAAGTGG
  GGAAAGGCAC TTGATGGGTA AGTCTGGCAA CCTGAGTGTG ATCCCTGGCA TCCACATAAG
  AGTAGAAAGA AAGAACCAAA TCCACAAAGC TGTCCCTTGA CCTCCACATG ACACCATGAC
  ACCCCACACG CACATCATGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320158846	CHEV_1_179251237	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs47103998					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:177148672 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1079	CpG island 1079	1622 bp proximal
Gm36904	predicted gene, 36904	within coordinates
Rr423981	regulatory region 423981	1145 bp proximal
Rr423982	regulatory region 423982	1646 bp proximal