rs47104081 SNP Detail

Summary

• ID
  rs47104081
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37165994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAATTTAG ATTTGAGATT
  GCTGTGTCAT CTGTTTTGTT TTTGTTTTGT TTTTTTTAGA AGCCAGCAAC TGGCTATTTT
  GTTAAGTTTT ATAGTTTATA AATGACGGTA ACTAACAAAA TGTTTTAACA CTCTTCCTTC
  CCCACCTCTT GCAGACCAAG TACACTGCTC CAAAAGCTCA ATGGAGATTG GCTAAAACCT
  Y
  TTCTCCCAGC ACAAGGGTGA CCTTGTGGTC CTGGGAGCAG CTGCTGTCAA TGCCAGCTCA
  TGCTTTTAAG GGTGACCACC CAGTGTTGGA GCAGCTGCAG CTCTGATCCC AGAGATCTTG
  CCCTAGCTAG GTATCCCTGA GACTGGAAGG GTCAGACAGG CTTAATAGAA CCAGTGATTT
  CTGGCTTGTT AACTAATCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss136309781	ENSMUSSNP3375185	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs47104081					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37165994 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21569	CpG island 21569	474 bp proximal
Gm10177	predicted gene 10177	1517 bp downstream
Gm48081	predicted gene, 48081	800 bp upstream
Gm65989	predicted gene, 65989	1333 bp downstream
Rr676656	regulatory region 676656	within coordinates
Rr676657	regulatory region 676657	706 bp proximal
Rr676658	regulatory region 676658	811 bp proximal
Rr676659	regulatory region 676659	1030 bp proximal
Rr676660	regulatory region 676660	1338 bp proximal
Slc37a2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	within coordinates
Tssr88821	transcription start site region 88821	659 bp downstream
Tssr88822	transcription start site region 88822	683 bp downstream
Tssr88823	transcription start site region 88823	705 bp downstream
Tssr88824	transcription start site region 88824	731 bp downstream
Tssr88825	transcription start site region 88825	746 bp downstream
Tssr88826	transcription start site region 88826	832 bp downstream
Tssr88827	transcription start site region 88827	925 bp downstream
Tssr88828	transcription start site region 88828	948 bp downstream
Tssr88829	transcription start site region 88829	971 bp downstream
Tssr88830	transcription start site region 88830	987 bp downstream
Tssr88831	transcription start site region 88831	1032 bp downstream