rs47104729 SNP Detail

Summary

• ID
  rs47104729
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:52315997 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGATAAGTT AATTTTAAAA
  AGTTTTGTTT TGAATTTATT TTTGTAAAAT TGAAAAATTT TAGTGTTAAC ACATTACTTT
  CTCCAGCTCT ACTATATTTA ACCAATTTGT TCCCCTTTCA GTGTCATTGA TTTCTGTGGT
  TCAAGGAAGA GTTTGCTAGC TACTTCTTTT GAGTTACAAG CTGAAAACAC TAGGAAAGGT
  Y
  CTATTACACT ACGAATTAGC AGTAAGTTTT TACAGGACAG GAGTATCTGC GTATTACTTG
  CTAAGTGATA GTTTTAATCA ATACTAAGTT ATAGGTAATG AAGTAATCTA GAGAAAAGTT
  TACAGTGTTC AATGGAGCTG GAGCTCTGCG TACTACAGAA GGATGCACAG TTTTATAGGG
  ACCATCTCTC ATTTATGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52719793	NES15554369	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47104729					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52719793	NES15554369	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:52315997 () rs orientation: forward

Symbol	Name	Function Class
Hnrnpc	heterogeneous nuclear ribonucleoprotein C	within coordinates
Rr289029	regulatory region 289029	604 bp proximal
Tssr128488	transcription start site region 128488	505 bp upstream
Tssr128489	transcription start site region 128489	986 bp downstream
Tssr128490	transcription start site region 128490	1653 bp downstream