rs47106602 SNP Detail

Summary

• ID
  rs47106602
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:125145043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACACCCATA AAAAGCATAG AGTAAGATGG TACTTATAAA
  ATGTTTAGTA AAAATCAAGA TACCAATCTG TGTCCAAAGG GATATTTTGA AAAAATAATA
  Y
  CATTGGGGGA ATCCCAGAGA CTGAAGCATC AACCAAAGAG CACGCAGGGG CTAGACCAGG
  TCACCCTACC CCCACATATA TGTAGCAGAT ATGAAGCTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147698325	ENSMUSSNP3297803	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47106602					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:125145043 () rs orientation: forward

Symbol	Name	Function Class
Gm45604	predicted gene 45604	within coordinates
Rr213395	regulatory region 213395	1758 bp proximal
Slc16a7	solute carrier family 16 (monocarboxylic acid transporters), member 7	within coordinates
Tssr96086	transcription start site region 96086	199 bp downstream
Tssr96087	transcription start site region 96087	169 bp downstream
Tssr99673	transcription start site region 99673	373 bp upstream
Tssr99674	transcription start site region 99674	368 bp upstream
Tssr99675	transcription start site region 99675	349 bp upstream
Tssr99676	transcription start site region 99676	321 bp upstream