rs47106686 SNP Detail

Summary

• ID
  rs47106686
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:40553918 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATGAACAA TGCCTGGTCT
  ATCCGTTTCC CCTTCATCCT CAGTATTCCT CCTTTAATCC CATTTAGATT TTGGATTACT
  GGGCTGTCCC TGTCACACCC TGGGAGTCTA AGCTCATGTG CCCTCATGTG CTTTCCTCTG
  AACCTGCAAT AGGTGGTAGG AAAACCTCAA ATCCTTTTGG GATTTGAGCT AGTTCCACAA
  Y
  TAGCATGAAT ACATGATTTT ATTTATTTAT TTATCTATTT ATTTATTGGC TTAGACCTGC
  CCTCAGTTGC TAACTCTTCT CTTAGATTTT CACCTTCACC TCAGGTCAAC ACTTACCTTG
  CCCCCACTCT GACATGAACT TGGGCTCTGC TTTTATTTTA TGCTCTTCTC CAGCCTTGTG
  CTGAAACAAT CCCCATGGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60721439	NES16360426	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C		T	T	C	T
ss148982901	ENSMUSSNP2588548	ENSEMBL	ENSEMBL_Sanger	f	SNP												C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47106686					SNP	T	T	T	T	T	T	C	T	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60721439	NES16360426	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:40553918 () rs orientation: forward

Symbol	Name	Function Class
Il18rap	interleukin 18 receptor accessory protein	630 bp upstream
Rr410075	regulatory region 410075	156 bp proximal
Rr410076	regulatory region 410076	615 bp proximal
Tssr65	transcription start site region 65	737 bp upstream
Tssr6477	transcription start site region 6477	619 bp upstream
Tssr6478	transcription start site region 6478	684 bp upstream
Tssr6479	transcription start site region 6479	713 bp upstream
Tssr11438	transcription start site region 11438	457 bp downstream
Tssr11439	transcription start site region 11439	1689 bp downstream
Tssr11440	transcription start site region 11440	1699 bp downstream
Tssr11441	transcription start site region 11441	1717 bp downstream
Tssr11442	transcription start site region 11442	1733 bp downstream
Tssr11443	transcription start site region 11443	1764 bp downstream