rs47107111 SNP Detail

Summary

• ID
  rs47107111
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:73996399 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGACTAAAG TGAGTCCTGG
  CCCGCTGGAG CAGACCTTCC TCCCTTTCCC TCATTGATGA AAGACCAACG CTGCCCATCA
  GTGTGGACAG GCCCTGCATC CTTCCCTTTG CCTTTGGTTG GGGCAGGGTC CTTGCTGGGC
  TGTGGTTAGT CCATCTGGCT CCTCTTTGGC TGGCCAACCT CTGAAAACCC TCTCAGTATC
  Y
  CATCCTACAG CTTCTCCCTT AGAAGAGATC ACCCACCCTT GTTTCAGAGA AATCTCACTC
  CCCCTTCTTT CTTGGGCTCC AGCTTATTCT GGGGATACCT CTCTGTTTGG TTCTCCACTT
  TGCCCATAGA GCTCTGTAAC ACACAGATCA AGAATGAATG TGTAGTTTTC TTTCCCAGCC
  TTCTTGAGAT ATGGTTCATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61845037	NES17772407	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47107111					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61845037	NES17772407	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:73996399 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5855	CpG island 5855	175 bp distal
Gm30303	predicted gene, 30303	within coordinates
Nkd2	naked cuticle 2	649 bp upstream
Rr482617	regulatory region 482617	550 bp distal
Rr482618	regulatory region 482618	332 bp distal
Tssr123198	transcription start site region 123198	661 bp upstream