rs47107708 SNP Detail

Summary

• ID
  rs47107708
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72569088 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGATG CAGAGCTGGA GGCTAGCCTG
  G
  GAGCCCCGAC CAGCCATGTC TCAAA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss136623036	ENSMUSSNP5373447	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss323002775	CHEV_9_72509613	CHEVERUD	SCREENING_POP	f	SNP		G	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs47107708					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72569088 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22018	CpG island 22018	within coordinates
Nedd4	neural precursor cell expressed, developmentally down-regulated 4	540 bp upstream
Rr401510	regulatory region 401510	1356 bp downstream
Rr682796	regulatory region 682796	1170 bp distal
Rr682797	regulatory region 682797	50 bp proximal
Tssr86018	transcription start site region 86018	175 bp upstream
Tssr86019	transcription start site region 86019	595 bp upstream
Tssr86020	transcription start site region 86020	614 bp upstream
Tssr86021	transcription start site region 86021	667 bp upstream
Tssr86022	transcription start site region 86022	1949 bp upstream
Tssr90495	transcription start site region 90495	1444 bp downstream
Tssr90496	transcription start site region 90496	1480 bp downstream
Tssr90497	transcription start site region 90497	1498 bp downstream