rs47108932 SNP Detail

Summary

• ID
  rs47108932
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:58956138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGGGGGCAC TAAGGGGCAA GTTGATGGCG GGGCGGGAGC
  TGGGCACTCA GACATTCATT CTCCAGGCTT GGGGTTCAGG GTGAGGAGAG CGCGGAGGGA
  S
  TGTGTCCCAG TTGGTGGTGT GTGGGGTCTA TTAGTCTCAT CCATGTCTGT TTGTCCTCAG
  CCCTGAGGTG CGCACCGATA TCGATATTCG TGCCGGTTTA                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	MOLF/EiJ
ss52643908	NES15465416	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	MOLF/EiJ
rs47108932					SNP	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52643908	NES15465416	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:58956138 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5731	CpG island 5731	within coordinates
Ntrk2	neurotrophic tyrosine kinase, receptor, type 2	within coordinates
Rr273002	regulatory region 273002	1738 bp distal
Rr281494	regulatory region 281494	within coordinates
Tssr120082	transcription start site region 120082	1702 bp downstream
Tssr120083	transcription start site region 120083	1669 bp downstream
Tssr120084	transcription start site region 120084	624 bp downstream
Tssr120085	transcription start site region 120085	486 bp downstream
Tssr120086	transcription start site region 120086	441 bp downstream
Tssr120087	transcription start site region 120087	422 bp downstream
Tssr120088	transcription start site region 120088	38 bp downstream
Tssr120089	transcription start site region 120089	359 bp upstream