rs47111440 SNP Detail

Summary

• ID
  rs47111440
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:28615286 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T CACAATGGCT AAAGTAACCA ACTTCACTGT GTAACCAGGG
  TGACTCTGTC ACCTCCTCAG ACTGTGAGCA TCAAGCATAG GCTATATTGA TAACATTCCC
  R
  GAAGTTGTTA TCTTTTTGTA TTCTAAGAGA CAAAGCTAAG TTACCAGCAG TACCACAAAT
  TTACTTTTAA GCCACCGAAA TACTGAGCAA ACAGGTATTC A                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss134714391	ENSMUSSNP69071	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47111440					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28615286 () rs orientation: forward

Symbol	Name	Function Class
Tnik	TRAF2 and NCK interacting kinase	within coordinates
Tssr28651	transcription start site region 28651	1977 bp downstream