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rs47111925 SNP Detail
Summary
  • ID
    rs47111925
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr12:85150037 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TACTTCATCC CACTGATGCC
    TTCCTTAGGT CAATCTTGGA AGCTGTGTAC ACGTATAGCA CAAATTATCT CACTAATTGT
    GTTTCTTTTA TTATTTATTA ACCTTTATCA TATATTTTTA GGTAAATATT TACGCTGCAT
    GTATGAAGAA ACTTGGGGCT GGTGAGTAGC TCTGTGGTTT AAAGAGCCTG CTACTCAAGC
    R
    TGAAGATCAA AGTTCATTTC CCCAGCGCCC TCATAAATGC CGGGTGGGGG TGGTGGCAGG
    GTTCGAGAGG CAGAGACTGG ATCCCTGAAG CAAGCTGGCT AGCTAGACCA ATCAAATCAG
    TTATGTTACA TACAGTGGAT AACAACCCGG GAAAACAGTC AACATCAACC TATGGCTTCC
    ACATGCACAC GAACCCACAC                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss52449559 NES15419796 PERLEGEN MM_PANEL2 f SNP G G G G G G G G G G G G G G A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs47111925 SNP G G G G G G G G G G G G G G A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss52449559 NES15419796 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr12:85150037 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm38355 predicted gene, 38355 916 bp upstream
Prox2 prospero homeobox 2 within coordinates
Rr264587 regulatory region 264587 within coordinates
Rr268707 regulatory region 268707 1638 bp distal
Rr269802 regulatory region 269802 1098 bp distal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory