rs47112372 SNP Detail

Summary

• ID
  rs47112372
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141152526 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGC TCACTGCTAA TCGGGGTCCC
  W
  GGGGCCTCTA CAGTCTTAGG ACCCT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147736224	ENSMUSSNP844492	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47112372					SNP	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141152526 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15228	CpG island 15228	621 bp proximal
Hspb7	heat shock protein family, member 7 (cardiovascular)	mRNA-UTR
Rr603759	regulatory region 603759	within coordinates
Rr603760	regulatory region 603760	88 bp proximal
Rr603761	regulatory region 603761	1079 bp proximal
Rr603762	regulatory region 603762	1589 bp proximal
Tssr40063	transcription start site region 40063	1206 bp downstream
Tssr40064	transcription start site region 40064	1145 bp downstream
Tssr40065	transcription start site region 40065	1118 bp downstream
Tssr40066	transcription start site region 40066	1014 bp downstream
Tssr40067	transcription start site region 40067	960 bp downstream
Tssr40068	transcription start site region 40068	905 bp downstream
Tssr40069	transcription start site region 40069	778 bp downstream
Tssr40070	transcription start site region 40070	684 bp downstream
Tssr40071	transcription start site region 40071	667 bp downstream
Tssr40072	transcription start site region 40072	622 bp downstream
Tssr40073	transcription start site region 40073	597 bp downstream
Tssr40074	transcription start site region 40074	570 bp downstream
Tssr40075	transcription start site region 40075	546 bp downstream
Tssr40076	transcription start site region 40076	530 bp downstream
Tssr40077	transcription start site region 40077	510 bp downstream
Tssr40078	transcription start site region 40078	1194 bp upstream
Tssr44315	transcription start site region 44315	1141 bp upstream
Tssr44316	transcription start site region 44316	1043 bp upstream
Tssr44317	transcription start site region 44317	1015 bp upstream
Tssr44318	transcription start site region 44318	615 bp upstream
Tssr44319	transcription start site region 44319	353 bp downstream