rs47113850 SNP Detail

Summary

• ID
  rs47113850
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:4500101 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGTCCCCT CTCATTCCCT
  GCGCCTTGCC TTCCTCCTTG TTTCACTGAA ATGCTCTTTG TTCCCATCAC TGACACCCAT
  GCACAAGCTC TCCAGCTGCC CTTGCACTTT ACACTAGCTT CATAACTACT TTCTGCTTGA
  TTGGTAGTTT TTGACCTTAA GAGTCTCAGA ATCCACTGAG AATTTGGTTG GTGAAGGTTA
  K
  GGATATCTAT CCAGGGTAAC ATGCACACAC ATTTTGTGTA CAAAACTGGG GGGTAGAAAG
  TGCCAGTGTG CTCTCTCTTG TGCACGTGTA TGTGTGTGTG TGTGTGGTGT CAATGTAGAC
  TGATCATCCT AAACCCATTC ATAAGCCCTC AGATTCTCTT CCTTTTATTT GGGAGGGTGG
  TGAAAAATGT AACTTTCCTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63636431	NES17047714	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47113850					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63636431	NES17047714	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:4500101 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7918	CpG island 7918	1452 bp proximal
Dnaja3	DnaJ heat shock protein family (Hsp40) member A3	1833 bp upstream
Rr370034	regulatory region 370034	1469 bp upstream
Rr391260	regulatory region 391260	within coordinates
Rr510905	regulatory region 510905	1970 bp distal
Rr510906	regulatory region 510906	1343 bp proximal
Tssr136865	transcription start site region 136865	1862 bp upstream
Tssr136866	transcription start site region 136866	1992 bp upstream