rs47113881 SNP Detail

Summary

• ID
  rs47113881
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:138154915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTTTTT TTTGTTTTTT
  TGTTTTTTTT TTTTTACTCA TCAATTTTTC TTTAATTATT TTGAACATTC TCACTAATTA
  AGAAAATATT TTATTTCAAA ACTTCTTATA GTAGAAAAAA GGATTACCTT TTTAACATGA
  TTTCTCCACT GCTTGATAAG TATAATAGTT ATATTTTTAA AATTTGGAAT TTATGTTGGT
  R
  CTAATGATAT TATATCCAAA ATAGCACCAT GGGTTTTTTT TTAAAGCACT CAGCACTCAG
  TTTTTAAAAG ATTTATTTTA ACCAGGCAGT GGTGGTGCAC GCCTTTAATC CCAGCACTTG
  GGAGACAGAG GCAGGTAGAT TTCTGAGTTC GAGGCCAGGC TGGTCACAGA GTGAGTTCCA
  GACAGCCAGG GCTACATAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60847386	NES16002703	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47113881					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60847386	NES16002703	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:138154915 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16854	CpG island 16854	787 bp distal
Rr399442	regulatory region 399442	668 bp downstream
Rr623038	regulatory region 623038	960 bp distal
Rr623039	regulatory region 623039	445 bp distal
Rr623040	regulatory region 623040	319 bp distal
Tssr54073	transcription start site region 54073	913 bp upstream
Zfp113	zinc finger protein 113	909 bp upstream