rs47114572 SNP Detail

Summary

• ID
  rs47114572
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134945180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTTTTTAG TTTGGGCTGC
  TTTTCAATAG AACTTCATCT GCCTCCACCT CCCAAATGCA TGCCAGCTTC TTCTTTTTTA
  AAAAGATTTA TTTTATGTAT GAGTACACTG TATCTGTCTT CAGACACACC AGAAGAGGGC
  ATCAGATCCC AATACAGATG GTTGTGAGCC ACCATGTGGT TGCTGGGAAT TGAACTCAAG
  R
  CCTCTGGAAG AGCAGTCAGT GCTCTTAACC ACTGAGCCAT CTCTCCACCC CAACACACCA
  GCTTCTAAAA CCATCTTTTC TTGTCTCAGA TCTTTACATG CAACAAATGC CCATTAGTAT
  TGCATTAAGC TTGGTTTGTC ACAGAATTAA CATTGTGGCC TTGAAAGGTC ACCACACAGA
  ATTAGACAGT GTCAGCCCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147541491	ENSMUSSNP4397932	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss321351214	CHEV_4_134773784	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs47114572					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134945180 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	within coordinates
Rr86243	regulatory region 86243	within coordinates
Rr86244	regulatory region 86244	1621 bp proximal
Tssr43955	transcription start site region 43955	1473 bp upstream
Tssr43956	transcription start site region 43956	1442 bp upstream
Tssr43957	transcription start site region 43957	1192 bp upstream
Tssr43958	transcription start site region 43958	1056 bp upstream
Tssr43959	transcription start site region 43959	1035 bp upstream
Tssr43960	transcription start site region 43960	883 bp upstream
Tssr43961	transcription start site region 43961	824 bp upstream
Tssr43962	transcription start site region 43962	778 bp upstream
Tssr43963	transcription start site region 43963	719 bp upstream
Tssr43964	transcription start site region 43964	607 bp upstream
Tssr43965	transcription start site region 43965	743 bp downstream