rs47114644 SNP Detail

Summary

• ID
  rs47114644
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:41579687 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAAGGATT TTTATTTTAA
  ATTATATATG TGTGTTCTTT TACTGTTGTT ATGTGTGTAT GAAAGCAAGG GCTAGAAAAG
  GGAGTTGGGA ATTTAGGTGG TTGTGAGCTA CCCTATGTGG GTTCTGGGAA CTGACCTGGG
  GTCCTTAGAA GAGCACCAGG TGCTCATAAT TGCTGAGCCC TGAAATTTGT TATTATTATT
  W
  TTAATGCTCA AATGTGCTAT GGCCCCAAAC CAGATTTATG TAATATTTAA ATGATTTTTA
  TGATGATTTG TTTGAGAGTT GCTCTAAAAA GACAGTATAG CTAGGAAATT GTATCTGCTG
  AATAAATGAA TGGCCAAATT GCTGCTAATT TTCTCCTGTA TGTGGGGTAC TAGAGTTCTC
  ACACAGAAAA GAATTTGGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60397268	NES15898191	PERLEGEN	MM_PANEL2	f	SNP	T	A	A	A	A	T	A	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47114644					SNP	T	A	A	A	A	T	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60397268	NES15898191	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41579687 () rs orientation: forward

Symbol	Name	Function Class
Gm66500	predicted gene, 66500	within coordinates
Sclt1	sodium channel and clathrin linker 1	1468 bp downstream