rs47116820 SNP Detail

Summary

• ID
  rs47116820
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:75699642 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGT TTGATCCCCA GGCATAGTGA
  Y
  GTGTACTTGT AATCCCAGTG CTGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145963259	ENSMUSSNP3350305	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss325451897	CHEV_17_75791987	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47116820					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:75699642 () rs orientation: forward

Symbol	Name	Function Class
Ltbp1	latent transforming growth factor beta binding protein 1	135 bp downstream
Rr392951	regulatory region 392951	682 bp upstream
Rr531033	regulatory region 531033	188 bp distal
Tssr145877	transcription start site region 145877	1683 bp downstream