rs47116980 SNP Detail

Summary

• ID
  rs47116980
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18997394 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCGCCTGT GGACTTTGCT
  TTGCCCAAAT ACAGCTGTGG AGCCCAGAAT GGCCCAGAAC TCTCCATCCT CTTACCTTCT
  CAAAGGCTCA CATTACAAGT AAATGCCACC ATGACCAACA CAGGGAACTC GGGGGAGGCT
  GGACAGACAG ACGTCTTGGT GTAGCAAGTG GTCGAGGAAA CTTTGCAGAG AGGGGCTTTT
  M
  TACTCGGCAT ACGCCAGGCA TCGACAGTTC CCATCAGTCT GCCTCCATAG GTTAGCTGAT
  TTCTAGGCAG GTAGACTCAG GCCCCGAAGG GCAGGACAGC AGCTTCAGGC TGCACAGCAC
  TGCTGAGCGG GTCTTCTGCT CACCCCAAAC CCCAGCCTGT TTGGCTGTTT GAGACAAGGT
  TTCTCTGTGT AGCCCTGGCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148471751	ENSMUSSNP1968822	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs47116980					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18997394 () rs orientation: forward

Symbol	Name	Function Class
Tssr70882	transcription start site region 70882	1410 bp upstream
Tssr70883	transcription start site region 70883	1000 bp downstream
Tssr70884	transcription start site region 70884	1341 bp downstream
Vasp	vasodilator-stimulated phosphoprotein	within coordinates