rs47117048 SNP Detail

Summary

• ID
  rs47117048
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:74791663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTTGGTTC CTCTGCCCTC
  TACTGGTGAG GTCTCACCCT TGAAAACTTT CCCTTCCCAC CAAAGTCTGA GTGTGCACAC
  AGGACACTCC CACAGGAACG GGCGTGTGCA TTCTGGTCTC CCCCAGCAGG AGGGGAATCC
  TGTTGGTCTG CATGGGATAG AGTGGTGACT TCACAGACAA ATCCCTGTTC TAAAAATGTG
  R
  TGAGGCCAAG AAAGAGAGAA AGCCAACAAA GCGGCTGGAG GTGCCCTTGC TGGCTGAGCA
  CGGCCTGCAG GGAGGGGCCC ACGGGTTCCA ATCACACCCG GTAGAGCCCA TGTTGCAAGT
  GATGGGGCCC TATCCCTGCT GCCTTAGTTA GGGTTACTTT CCCTGTGAGA AAGCACCATG
  ACGAAAAGCA GCTTGGGGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52570510	NES15642355	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47117048					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52570510	NES15642355	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:74791663 () rs orientation: forward

Symbol	Name	Function Class
Gm62792	predicted gene, 62792	within coordinates
Tssr131597	transcription start site region 131597	1085 bp downstream
Tssr131598	transcription start site region 131598	1046 bp downstream
Tssr134806	transcription start site region 134806	962 bp downstream