rs47120200 SNP Detail

Summary

• ID
  rs47120200
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:22437454 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGCAGGAC TGTGTGAGCA
  TTTGATGATG TCACACACCC CGGGCCCTCC ACCCCCCCAT GCTCTGTATT CCAGACTGGC
  CTGAAATCAG CTATGTCTTC CAGACTGGCA TTCATCTTGC TATCTTCCTG TAGCCACTTC
  CTGAGAGACA GGGCTACAGT TGGCTTTTAT TTTGTAATAA AAATTTCTTA ACAGCACAGT
  W
  CCTTCTCGAT AAACTCTCTT CATGGTTGCC TCACAGTGAA CTTACTCTCA ACACAGACAT
  GTGTTCCTGT GTGGTTGACT TCAGGTATAG ACCCAAATCA ATGTTTCCAG GAGCAGTTTT
  TAGATAGTGT CTCCTACCAG AAGGCCTCCG GAGAAGGTGT GAGTTTACGT AACACAAGTG
  GAGAACGCCT CTTCCCTAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss63684830	NES17069259	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T		T	T		A
ss325112137	CHEV_16_22618777	CHEVERUD	SCREENING_POP	f	SNP										T			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs47120200					SNP	T	T	T	T	T	T	T	T	T	T	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63684830	NES17069259	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:22437454 () rs orientation: forward

Symbol	Name	Function Class
Dgkg	diacylglycerol kinase, gamma	within coordinates
Tssr4816	transcription start site region 4816	672 bp upstream