rs47121010 SNP Detail

Summary

• ID
  rs47121010
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122630142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTATTCCT AAGTGTGCTG
  ACACAGAACA GGAACAATAA TGTCTTTCTG CCCAAGTGCT GAAAAAGCTT ACACTTAAAG
  AAGGTGGCAT GTGGTAAGGC ACTTGCCCAG CACACATGGG CTGCGGGTTT AGTCCTCAGC
  ATCACATACA AGCACAGACC ACAGGGGACA TGATATAAAA GCCAAACAGT CAGAGAGACG
  R
  CAACTCTGTA TCACTGGGCC CTTTACGGTG GACAAAGGAT GGCGCTTCTG GGCTTCACAG
  AGGAAGTTAG CACCGGAGAG CTGGCACTTC CTGTTGCTTT GTGTACAGAA ATGCAGCATC
  TGAGAGTGTC ATTGTTCACA TCTTATTCAT CTAGAATGGC GCAAATTAAT ATGGAAGAAA
  GACAAGAAAG CAAGAGAGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60938548	NES16184791	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47121010					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60938548	NES16184791	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122630142 () rs orientation: forward

Symbol	Name	Function Class
Rr638242	regulatory region 638242	1052 bp proximal
Tssr58692	transcription start site region 58692	1398 bp upstream
Tssr62939	transcription start site region 62939	1189 bp downstream