rs47122297 SNP Detail

Summary

• ID
  rs47122297
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99944366 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATATCTGGT TTCCCCGCTG
  ACTGTCCTGC AGAAGGTGAC ATGGAACAAT TCATCAGGAT GGAGCGTTCA GGCAGACTGG
  CTGGTGAGTA AGCACAAAGC TGACATCCCG TGTCTCTTGC ACTGTATCAA CTAGCTGGAG
  TAGATTTGCC TCTTGAAAAA ATAAGAGAAA TGAGGCCCCA GGCATAACCA TGCCCTGTGA
  Y
  TTACTCAGGC TAGCAGTAGA CTTAAGTGAT TTCTTGGACT ACTTGCATGC TTTAATCCCC
  CTAAGAAGAA ACTGAGATCT TCATGGACCC TCAAACCTGC CTTTCTTTAT CTGGTTTGAT
  TTAATTCAAA AATACATTCA CTAGGCTTTA GAACAGAACC AAGTTGAAAC AGAAGAATCA
  AAGATGATAA GACATTCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132717846	ENSMUSSNP5444971	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
ss323830638	CHEV_11_99914854	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47122297					SNP	T	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99944366 () rs orientation: forward

Symbol	Name	Function Class
Gm11571	predicted gene 11571	within coordinates
Tssr104894	transcription start site region 104894	1425 bp downstream
Tssr104895	transcription start site region 104895	1275 bp downstream
Tssr104896	transcription start site region 104896	1248 bp downstream