rs47122622 SNP Detail

Summary

• ID
  rs47122622
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:87957848 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCACCACA TCCAGCTGAA
  AACGTAACTT TAAGACCCCC AAACATTGAG GGGGTGGTGT TGGTGTACGC CTTTAATCCC
  CAGCGCTCAG GATGCAGAAG CAGGGGATCG CTGAGTTCAA GGCCAGCTTG GTCTACTGGC
  TGAGTTCTGG GACAGCCGGT TCTTTGTTGC TTCTAAGCAA AGAAACCCTG TTTCCTCCTC
  Y
  GTTGCAGATA AAGGAGATGG GTGAGATCCA CAGAGAGCTT AATGCCTAGC CGTGCTGAGT
  GCTGAACTGA GGAGGGGCCG CCCGACCGGA AGTGGCAGAA GAGCTCGGAC TGCAGATGTA
  TAAACCTGGG GAAGATGAAG ACCTGCGAAG GGTTACTGCT TTGATAGTTA CTTTGTTAGT
  TTCACATTTG TAACAGTGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60290172	NES15780189	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47122622					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60290172	NES15780189	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:87957848 () rs orientation: forward

Symbol	Name	Function Class
Epcam	epithelial cell adhesion molecule	within coordinates
Rr333876	regulatory region 333876	1953 bp proximal
Tssr146207	transcription start site region 146207	12 bp upstream
Tssr146208	transcription start site region 146208	32 bp upstream
Tssr146209	transcription start site region 146209	71 bp upstream
Tssr146210	transcription start site region 146210	145 bp upstream
Tssr146211	transcription start site region 146211	402 bp upstream