rs47122687 SNP Detail

Summary

• ID
  rs47122687
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:67971644 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTTATGAA GATCTCGAGG GTTATTTAAA ATAAATTCCA
  AAGCTTACAC TGGGGTTAGC CTGACTCCTG TGGAGGTTGA TTTTGTGTGT GTGTGTGTGT
  R
  TGTGTGTGTG TGTGTGTGTG TTATTAAAGC CATAGTTACA AACGACACAG GTGATACTGA
  TCTTGGGTTG TTTATGGGGT GTCCTGACTG CTCTCCTAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss147146155	ENSMUSSNP56163	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss323351597	CHEV_10_67598562	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs47122687					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:67971644 () rs orientation: forward

Symbol	Name	Function Class
Arid5b	AT-rich interaction domain 5B	within coordinates
Cpgi1679	CpG island 1679	629 bp proximal
Rr384864	regulatory region 384864	385 bp upstream
Rr433196	regulatory region 433196	932 bp distal
Rr433197	regulatory region 433197	within coordinates
Rr433198	regulatory region 433198	720 bp proximal
Rr433199	regulatory region 433199	802 bp proximal
Tssr3230	transcription start site region 3230	911 bp downstream
Tssr3231	transcription start site region 3231	927 bp downstream
Tssr3232	transcription start site region 3232	993 bp downstream
Tssr93877	transcription start site region 93877	1189 bp upstream
Tssr93878	transcription start site region 93878	1968 bp upstream
Tssr97989	transcription start site region 97989	530 bp upstream
Tssr97990	transcription start site region 97990	513 bp upstream
Tssr97991	transcription start site region 97991	757 bp downstream
Tssr97992	transcription start site region 97992	799 bp downstream
Tssr97993	transcription start site region 97993	813 bp downstream
Tssr97994	transcription start site region 97994	836 bp downstream
Tssr97995	transcription start site region 97995	870 bp downstream
Tssr97996	transcription start site region 97996	888 bp downstream
Tssr97997	transcription start site region 97997	899 bp downstream
Tssr97998	transcription start site region 97998	965 bp downstream
Tssr97999	transcription start site region 97999	1390 bp downstream
Tssr98000	transcription start site region 98000	1547 bp downstream